Your favorite polarizing CBM! Go!
I'm going with TDKR. Mainly because I'm counting your post as having a loophole, since MoS isn't technically a sequel, I don't have to choose between it and TDKR. TDKR wins by default.
Sequel? Who said anything about sequels....
Iron Man 3
What a twist!
I would have a hard time choosing between IM 3 and Amazing Spider-Man 2. I feel IM3 is a much better movie overall, but I love some parts of ASM 2, which I don't so much with IM 3. From a narrative standpoint, IM3 all works very well in my opinion. From what I've observed, where folks get hung up are where their expectations were defied more than the idea that it wasn't a good movie or well told story--mostly the twists and odd decision here or there like all the tin foil drones at the end. Spider-Man, on the other hand, gets some of the comic stuff perfectly right (which Iron Man never bothers very much with). That opening scene may be one of my favorites in all of comic movies. Yet I walked away feeling really ambivalent, while I left IM 3 feeling like I had just seen a pretty good, albeit very weird comic movie.Iron Man 3
What a twist!