I feel exactly the same way about the Reeve Superman films AND the Burton Batmans. Sure, as a kid I loved them, but they are nearly unwatchable today, especially the romance flight scene in Superman and basically all of Burton Batman.
Nothing, I mean NOTHING makes sense. Does it look cool? Yeah. Does it have some really amazing badass scenes and images (like when Bruce rises out of his chair with the Batsignal behind him, or the fight against the sword guy)? Hell yeah, but as a story nothing makes sense. For example Batman attacks those two robbers at the beginning of the movie AFTER they robbed the family, then he kicks one down, holds one up, says his name and then leaves. I mean... WHAT? And the Batplane scene? What is he doing? He locks onto Joker and a million bullets and rockets all miss and then joker shoots him down with a handgun? WTF?
Not to mention that Batman kills more people than Joker and Peguin combined.
But again... I love the Keaton PF. I need the Keaton PF.