The plot and script of PROMETHEUS is just as convoluted and poorly-written as MAN OF STEEL, if not even moreso. So we're good.
OH DONT EVEN TRY IT!!!
Please point us to even one plot-point of MoS on a par with two scientists getting lost in an alien structure WHICH IS COMPLETELY HOLOGRAPHICALLY MAPPED ON THEIR SHIP, and they don't ask for help from the people standing around looking at the hologram!!! and are mysteriously completely unable to find their way out.
Please point me to even one second of MoS on a par with two lost, idiot scientists going "Awwww, how cute is he?!!!!" to an alien organism and reaching out to pet it, when it is obviously in leave-me-alone mode.
I could go on! You compare shiny red fruit to round, uneven orange fruits, my friend.